PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00069.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 155aa    MW: 17371.4 Da    PI: 5.0774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00069.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-1054862455
                      AP2 24 eng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++  k++r++lg+f taeeAa a++ a+k+++g
  Rsa1.0_00069.1_g00005.1 54 TRSsKSTRVWLGTFNTAEEAAMAYDVAAKRIRG 86
                             344457************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.8821194IPR001471AP2/ERF domain
SMARTSM003802.6E-1350100IPR001471AP2/ERF domain
CDDcd000183.34E-185096No hitNo description
PfamPF008472.1E-75586IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-135795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-185795IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVVCNFAPLN YISGVESGGH GEKEKGATYG KKEEEERLRR DTQTSMEEMG VRYTRSSKST  60
RVWLGTFNTA EEAAMAYDVA AKRIRGDKAK LNFPDLLHPS RLTSDDLPPA KKLCVHSQIC  120
HDLLQQISSL ESFLELDGTT AEQPSQLDES RYVDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893177e-58AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146062.15e-40PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_009146063.15e-40PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X2
RefseqXP_013749539.15e-40PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_013749540.15e-40PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X2
SwissprotP427363e-37RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078DUI05e-40A0A078DUI0_BRANA; BnaA05g23130D protein
TrEMBLM4E0795e-40M4E079_BRARP; Uncharacterized protein
STRINGBra022176.1-P1e-39(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2249524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-28ethylene-responsive element binding protein